WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46G7.4l.1 Sequence Name  C46G7.4l.1
Length (nt)  3048   Chromosome Location  IV: 6019978-6031547
Chromosome . Primary Identifier  IV Chromosome Location . Start  6019978
Chromosome Location . End  6031547 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46G7.4l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004112 pqn-22 C46G7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46G7.4l C46G7.4l 3048   IV: 6019978-6020187

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C46G7.4l.1 6019978 6031547 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon124680   210   IV: 6019978-6020187 Caenorhabditis elegans
Exon124700   246   IV: 6020944-6021189 Caenorhabditis elegans
Exon124724   159   IV: 6021590-6021748 Caenorhabditis elegans
Exon124745   174   IV: 6021984-6022157 Caenorhabditis elegans
Exon124765   81   IV: 6022205-6022285 Caenorhabditis elegans
Exon124787   114   IV: 6022940-6023053 Caenorhabditis elegans
Exon124804   63   IV: 6023227-6023289 Caenorhabditis elegans
Exon124817   75   IV: 6023337-6023411 Caenorhabditis elegans
Exon124828   132   IV: 6023454-6023585 Caenorhabditis elegans
Exon124851   338   IV: 6024450-6024787 Caenorhabditis elegans
Exon124875   82   IV: 6026328-6026409 Caenorhabditis elegans
Exon124896   105   IV: 6026576-6026680 Caenorhabditis elegans
Exon124919   90   IV: 6027074-6027163 Caenorhabditis elegans
Exon124935   111   IV: 6027414-6027524 Caenorhabditis elegans
Exon124965   282   IV: 6029157-6029438 Caenorhabditis elegans
Exon124983   621   IV: 6030081-6030701 Caenorhabditis elegans
Exon125000   112   IV: 6030974-6031085 Caenorhabditis elegans
Exon125017   53   IV: 6031495-6031547 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C46G7.4l.1 6019978 6031547 -1

1 Sequence

Length
3048

1 Sequence Ontology Term

Identifier Name Description
transcript