WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46G7.4t.1 Sequence Name  C46G7.4t.1
Length (nt)  3096   Chromosome Location  IV: 6019978-6033639
Chromosome . Primary Identifier  IV Chromosome Location . Start  6019978
Chromosome Location . End  6033639 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46G7.4t.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004112 pqn-22 C46G7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46G7.4t C46G7.4t 3096   IV: 6019978-6020187

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C46G7.4t.1 6019978 6033639 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon124685   210   IV: 6019978-6020187 Caenorhabditis elegans
Exon124708   246   IV: 6020944-6021189 Caenorhabditis elegans
Exon124732   159   IV: 6021590-6021748 Caenorhabditis elegans
Exon124753   174   IV: 6021984-6022157 Caenorhabditis elegans
Exon124773   81   IV: 6022205-6022285 Caenorhabditis elegans
Exon124795   114   IV: 6022940-6023053 Caenorhabditis elegans
Exon124810   63   IV: 6023227-6023289 Caenorhabditis elegans
Exon124859   338   IV: 6024450-6024787 Caenorhabditis elegans
Exon124883   82   IV: 6026328-6026409 Caenorhabditis elegans
Exon124904   105   IV: 6026576-6026680 Caenorhabditis elegans
Exon124927   90   IV: 6027074-6027163 Caenorhabditis elegans
Exon124943   111   IV: 6027414-6027524 Caenorhabditis elegans
Exon124973   282   IV: 6029157-6029438 Caenorhabditis elegans
Exon124991   621   IV: 6030081-6030701 Caenorhabditis elegans
Exon125008   112   IV: 6030974-6031085 Caenorhabditis elegans
Exon125026   125   IV: 6031495-6031619 Caenorhabditis elegans
Exon125042   183   IV: 6033457-6033639 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C46G7.4t.1 6019978 6033639 -1

1 Sequence

Length
3096

1 Sequence Ontology Term

Identifier Name Description
transcript