WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H16O14.1a.1 Sequence Name  H16O14.1a.1
Length (nt)  3728   Chromosome Location  IV: 6040976-6074507
Chromosome . Primary Identifier  IV Chromosome Location . Start  6040976
Chromosome Location . End  6074507 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H16O14.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019205 kcc-2 H16O14.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H16O14.1a H16O14.1a 3186   IV: 6040976-6041048

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H16O14.1a.1 6040976 6074507 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon125061   73   IV: 6040976-6041048 Caenorhabditis elegans
Exon125130   59   IV: 6062095-6062153 Caenorhabditis elegans
Exon125142   108   IV: 6064344-6064451 Caenorhabditis elegans
Exon125150   150   IV: 6065506-6065655 Caenorhabditis elegans
Exon125165   540   IV: 6066965-6067504 Caenorhabditis elegans
Exon125171   349   IV: 6068288-6068636 Caenorhabditis elegans
Exon125176   352   IV: 6068748-6069099 Caenorhabditis elegans
Exon125189   583   IV: 6070333-6070915 Caenorhabditis elegans
Exon125195   206   IV: 6071520-6071725 Caenorhabditis elegans
Exon125202   193   IV: 6072181-6072373 Caenorhabditis elegans
Exon125208   165   IV: 6072522-6072686 Caenorhabditis elegans
Exon125213   132   IV: 6072766-6072897 Caenorhabditis elegans
Exon125219   184   IV: 6073565-6073748 Caenorhabditis elegans
Exon125229   634   IV: 6073874-6074507 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H16O14.1a.1 6040976 6074507 1

1 Sequence

Length
3728

1 Sequence Ontology Term

Identifier Name Description
transcript