WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H16O14.1d.1 Sequence Name  H16O14.1d.1
Length (nt)  3390   Chromosome Location  IV: 6053799-6073965
Chromosome . Primary Identifier  IV Chromosome Location . Start  6053799
Chromosome Location . End  6073965 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H16O14.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019205 kcc-2 H16O14.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H16O14.1d H16O14.1d 3390   IV: 6053799-6053925

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H16O14.1d.1 6053799 6073965 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon125106   127   IV: 6053799-6053925 Caenorhabditis elegans
Exon125126   150   IV: 6061671-6061820 Caenorhabditis elegans
Exon125133   59   IV: 6062095-6062153 Caenorhabditis elegans
Exon125145   108   IV: 6064344-6064451 Caenorhabditis elegans
Exon125153   150   IV: 6065506-6065655 Caenorhabditis elegans
Exon125168   540   IV: 6066965-6067504 Caenorhabditis elegans
Exon125174   349   IV: 6068288-6068636 Caenorhabditis elegans
Exon125179   352   IV: 6068748-6069099 Caenorhabditis elegans
Exon125192   583   IV: 6070333-6070915 Caenorhabditis elegans
Exon125198   206   IV: 6071520-6071725 Caenorhabditis elegans
Exon125205   193   IV: 6072181-6072373 Caenorhabditis elegans
Exon125211   165   IV: 6072522-6072686 Caenorhabditis elegans
Exon125216   132   IV: 6072766-6072897 Caenorhabditis elegans
Exon125222   184   IV: 6073565-6073748 Caenorhabditis elegans
Exon125225   92   IV: 6073874-6073965 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H16O14.1d.1 6053799 6073965 1

1 Sequence

Length
3390

1 Sequence Ontology Term

Identifier Name Description
transcript