WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C11D2.6f.1 Sequence Name  C11D2.6f.1
Length (nt)  5217   Chromosome Location  IV: 6157443-6171287
Chromosome . Primary Identifier  IV Chromosome Location . Start  6157443
Chromosome Location . End  6171287 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C11D2.6f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006809 unc-77 C11D2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C11D2.6f C11D2.6f 5217   IV: 6157443-6157553

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C11D2.6f.1 6157443 6171287 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon125598   111   IV: 6157443-6157553 Caenorhabditis elegans
Exon125615   108   IV: 6157602-6157709 Caenorhabditis elegans
Exon125639   72   IV: 6158321-6158392 Caenorhabditis elegans
Exon125655   394   IV: 6158469-6158862 Caenorhabditis elegans
Exon125673   274   IV: 6159867-6160140 Caenorhabditis elegans
Exon125691   136   IV: 6160313-6160448 Caenorhabditis elegans
Exon125709   94   IV: 6161018-6161111 Caenorhabditis elegans
Exon125725   157   IV: 6161161-6161317 Caenorhabditis elegans
Exon125745   844   IV: 6162027-6162870 Caenorhabditis elegans
Exon125764   178   IV: 6163505-6163682 Caenorhabditis elegans
Exon125780   95   IV: 6163784-6163878 Caenorhabditis elegans
Exon125796   132   IV: 6163927-6164058 Caenorhabditis elegans
Exon125815   316   IV: 6164487-6164802 Caenorhabditis elegans
Exon125832   183   IV: 6165395-6165577 Caenorhabditis elegans
Exon125861   121   IV: 6166244-6166364 Caenorhabditis elegans
Exon125878   98   IV: 6166573-6166670 Caenorhabditis elegans
Exon125895   179   IV: 6166749-6166927 Caenorhabditis elegans
Exon125912   138   IV: 6167122-6167259 Caenorhabditis elegans
Exon125929   495   IV: 6167779-6168273 Caenorhabditis elegans
Exon125949   497   IV: 6168521-6169017 Caenorhabditis elegans
Exon125966   116   IV: 6169701-6169816 Caenorhabditis elegans
Exon125982   142   IV: 6169899-6170040 Caenorhabditis elegans
Exon125998   100   IV: 6170087-6170186 Caenorhabditis elegans
Exon126018   135   IV: 6170468-6170602 Caenorhabditis elegans
Exon126035   65   IV: 6170740-6170804 Caenorhabditis elegans
Exon126048   37   IV: 6171251-6171287 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C11D2.6f.1 6157443 6171287 -1

1 Sequence

Length
5217

1 Sequence Ontology Term

Identifier Name Description
transcript