WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C11D2.6p.1 Sequence Name  C11D2.6p.1
Length (nt)  5517   Chromosome Location  IV: 6157443-6183857
Chromosome . Primary Identifier  IV Chromosome Location . Start  6157443
Chromosome Location . End  6183857 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C11D2.6p.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006809 unc-77 C11D2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C11D2.6p C11D2.6p 5517   IV: 6157443-6157553

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C11D2.6p.1 6157443 6183857 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

29 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon125609   111   IV: 6157443-6157553 Caenorhabditis elegans
Exon125625   108   IV: 6157602-6157709 Caenorhabditis elegans
Exon125649   72   IV: 6158321-6158392 Caenorhabditis elegans
Exon125665   394   IV: 6158469-6158862 Caenorhabditis elegans
Exon125683   274   IV: 6159867-6160140 Caenorhabditis elegans
Exon125701   136   IV: 6160313-6160448 Caenorhabditis elegans
Exon125719   94   IV: 6161018-6161111 Caenorhabditis elegans
Exon125735   157   IV: 6161161-6161317 Caenorhabditis elegans
Exon125755   844   IV: 6162027-6162870 Caenorhabditis elegans
Exon125774   178   IV: 6163505-6163682 Caenorhabditis elegans
Exon125790   95   IV: 6163784-6163878 Caenorhabditis elegans
Exon125806   132   IV: 6163927-6164058 Caenorhabditis elegans
Exon125825   316   IV: 6164487-6164802 Caenorhabditis elegans
Exon125842   183   IV: 6165395-6165577 Caenorhabditis elegans
Exon125854   102   IV: 6165946-6166047 Caenorhabditis elegans
Exon125871   121   IV: 6166244-6166364 Caenorhabditis elegans
Exon125888   98   IV: 6166573-6166670 Caenorhabditis elegans
Exon125905   179   IV: 6166749-6166927 Caenorhabditis elegans
Exon125922   138   IV: 6167122-6167259 Caenorhabditis elegans
Exon125939   495   IV: 6167779-6168273 Caenorhabditis elegans
Exon125959   497   IV: 6168521-6169017 Caenorhabditis elegans
Exon125976   116   IV: 6169701-6169816 Caenorhabditis elegans
Exon125992   142   IV: 6169899-6170040 Caenorhabditis elegans
Exon126008   100   IV: 6170087-6170186 Caenorhabditis elegans
Exon126028   135   IV: 6170468-6170602 Caenorhabditis elegans
Exon126045   65   IV: 6170740-6170804 Caenorhabditis elegans
Exon126061   156   IV: 6171251-6171406 Caenorhabditis elegans
Exon126093   46   IV: 6179207-6179252 Caenorhabditis elegans
Exon126111   33   IV: 6183825-6183857 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C11D2.6p.1 6157443 6183857 -1

1 Sequence

Length
5517

1 Sequence Ontology Term

Identifier Name Description
transcript