WormMine: Gene WBGene00171071

• WormBase Gene ID: WBGene00171071
• Gene Name: 21ur-8190
• Sequence Name: F58F9.16
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cadmium based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: IV :3.10623±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00171071

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F58F9.16	F58F9.16	21	IV: 6235646-6235666

Other

0 CDSs

0 RNAi Result

8 Allele

• gk964500
• gk963722
• gk963417
• gk963416
• WBVar02124590
• WBVar02124698
• WBVar02122600
• WBVar02124794

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00171071
• Start: 6235646
• End: 6235666
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_6235620..6235645
• Length (nt): 26
• Chromosome Location: IV: 6235620-6235645
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased exression in animals exposed to 100uM cadmium for 24 hours.	DESeq2 v1.20.0, fold change > 2, FDR < 0.05.	WBPaper00065029:cadmium_upregulated
	piRNAs that showed significantly higher expression (log2fold > 2, padj < 0.01) in hermaphrodite gonad (somatic gonad plus germine) than in male gonad (somatic gonad plus germine).	DESeq2 v1.13.8, fold change > 2, FDR < 0.01.	WBPaper00056161:hermaphrodite_enriched_piRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00171071
• Start: 6235646
• End: 6235666
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term