WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13A10.10a.1 Sequence Name  T13A10.10a.1
Length (nt)  1804   Chromosome Location  IV: 6272529-6275721
Chromosome . Primary Identifier  IV Chromosome Location . Start  6272529
Chromosome Location . End  6275721 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13A10.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000005 aat-4 T13A10.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13A10.10a T13A10.10a 1581   IV: 6272744-6272814

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13A10.10a.1 6272529 6275721 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon126357   286   IV: 6272529-6272814 Caenorhabditis elegans
Exon126360   120   IV: 6272927-6273046 Caenorhabditis elegans
Exon126362   100   IV: 6273098-6273197 Caenorhabditis elegans
Exon126367   187   IV: 6273267-6273453 Caenorhabditis elegans
Exon126370   138   IV: 6273709-6273846 Caenorhabditis elegans
Exon126373   228   IV: 6273977-6274204 Caenorhabditis elegans
Exon126375   145   IV: 6274255-6274399 Caenorhabditis elegans
Exon126377   132   IV: 6274486-6274617 Caenorhabditis elegans
Exon126379   81   IV: 6274672-6274752 Caenorhabditis elegans
Exon126381   109   IV: 6274800-6274908 Caenorhabditis elegans
Exon126385   179   IV: 6275335-6275513 Caenorhabditis elegans
Exon126390   99   IV: 6275623-6275721 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13A10.10a.1 6272529 6275721 -1

1 Sequence

Length
1804

1 Sequence Ontology Term

Identifier Name Description
transcript