WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T13A10.11a Sequence Name  T13A10.11a
Length (nt)  1215   Chromosome Location  IV: 6277481-6277646
Chromosome . Primary Identifier  IV Chromosome Location . Start  6277481
Chromosome Location . End  6277646
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13A10.11a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE30175 SAMS-5, isoform a 43.9 404 Caenorhabditis elegans
 

Other

18 RNAi

WormBase ID
WBRNAi00053234
WBRNAi00026286
WBRNAi00027472
WBRNAi00072638
WBRNAi00074742
WBRNAi00074747
WBRNAi00018649
WBRNAi00076675
WBRNAi00035524
WBRNAi00071415
WBRNAi00071414
WBRNAi00074744
WBRNAi00074743
WBRNAi00074745
WBRNAi00074746
WBRNAi00072639
WBRNAi00074741
WBRNAi00106977

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T13A10.11a 6277481 6277646 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006416 sams-5 T13A10.11 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:T13A10.11a 6277481 6277646 -1
CDS:T13A10.11a 6277692 6278101 -1
CDS:T13A10.11a 6278149 6278531 -1
CDS:T13A10.11a 6278577 6278699 -1
CDS:T13A10.11a 6278892 6278952 -1
CDS:T13A10.11a 6279071 6279142 -1

1 Sequence

Length
1215

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T13A10.11a.2 T13A10.11a.2 1305   IV: 6277433-6279184
Transcript:T13A10.11a.1 T13A10.11a.1 1333   IV: 6277436-6279522