WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73B6BL.18a.1 Sequence Name  Y73B6BL.18a.1
Length (nt)  3706   Chromosome Location  IV: 6362395-6373087
Chromosome . Primary Identifier  IV Chromosome Location . Start  6362395
Chromosome Location . End  6373087 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6BL.18a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004881 smg-3 Y73B6BL.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73B6BL.18a Y73B6BL.18a 3429   IV: 6365405-6365453

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6BL.18a.1 6362395 6373087 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon126643   9   IV: 6362395-6362403 Caenorhabditis elegans
Exon126646   230   IV: 6362425-6362654 Caenorhabditis elegans
Exon126657   87   IV: 6365367-6365453 Caenorhabditis elegans
Exon126662   346   IV: 6365505-6365850 Caenorhabditis elegans
Exon126669   79   IV: 6368130-6368208 Caenorhabditis elegans
Exon126676   142   IV: 6368573-6368714 Caenorhabditis elegans
Exon126684   101   IV: 6369013-6369113 Caenorhabditis elegans
Exon126690   142   IV: 6369172-6369313 Caenorhabditis elegans
Exon126696   375   IV: 6369787-6370161 Caenorhabditis elegans
Exon126702   347   IV: 6370595-6370941 Caenorhabditis elegans
Exon126708   873   IV: 6370993-6371865 Caenorhabditis elegans
Exon126714   93   IV: 6371910-6372002 Caenorhabditis elegans
Exon126720   230   IV: 6372055-6372284 Caenorhabditis elegans
Exon126726   212   IV: 6372334-6372545 Caenorhabditis elegans
Exon126732   179   IV: 6372601-6372779 Caenorhabditis elegans
Exon126738   261   IV: 6372827-6373087 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6BL.18a.1 6362395 6373087 -1

1 Sequence

Length
3706

1 Sequence Ontology Term

Identifier Name Description
transcript