WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73B6BL.18a.2 Sequence Name  Y73B6BL.18a.2
Length (nt)  3703   Chromosome Location  IV: 6362419-6373087
Chromosome . Primary Identifier  IV Chromosome Location . Start  6362419
Chromosome Location . End  6373087 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6BL.18a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004881 smg-3 Y73B6BL.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73B6BL.18a Y73B6BL.18a 3429   IV: 6365405-6365453

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6BL.18a.2 6362419 6373087 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon126645   236   IV: 6362419-6362654 Caenorhabditis elegans
Exon126658   87   IV: 6365367-6365453 Caenorhabditis elegans
Exon126663   346   IV: 6365505-6365850 Caenorhabditis elegans
Exon126670   79   IV: 6368130-6368208 Caenorhabditis elegans
Exon126677   142   IV: 6368573-6368714 Caenorhabditis elegans
Exon126685   101   IV: 6369013-6369113 Caenorhabditis elegans
Exon126691   142   IV: 6369172-6369313 Caenorhabditis elegans
Exon126697   375   IV: 6369787-6370161 Caenorhabditis elegans
Exon126703   347   IV: 6370595-6370941 Caenorhabditis elegans
Exon126709   873   IV: 6370993-6371865 Caenorhabditis elegans
Exon126715   93   IV: 6371910-6372002 Caenorhabditis elegans
Exon126721   230   IV: 6372055-6372284 Caenorhabditis elegans
Exon126727   212   IV: 6372334-6372545 Caenorhabditis elegans
Exon126733   179   IV: 6372601-6372779 Caenorhabditis elegans
Exon126739   261   IV: 6372827-6373087 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6BL.18a.2 6362419 6373087 -1

1 Sequence

Length
3703

1 Sequence Ontology Term

Identifier Name Description
transcript