WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73B6BL.18b.1 Sequence Name  Y73B6BL.18b.1
Length (nt)  3699   Chromosome Location  IV: 6362431-6373089
Chromosome . Primary Identifier  IV Chromosome Location . Start  6362431
Chromosome Location . End  6373089 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6BL.18b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004881 smg-3 Y73B6BL.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73B6BL.18b Y73B6BL.18b 3435   IV: 6365405-6365453

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6BL.18b.1 6362431 6373089 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon126648   224   IV: 6362431-6362654 Caenorhabditis elegans
Exon126659   87   IV: 6365367-6365453 Caenorhabditis elegans
Exon126666   346   IV: 6365505-6365850 Caenorhabditis elegans
Exon126673   85   IV: 6368130-6368214 Caenorhabditis elegans
Exon126680   142   IV: 6368573-6368714 Caenorhabditis elegans
Exon126688   101   IV: 6369013-6369113 Caenorhabditis elegans
Exon126694   142   IV: 6369172-6369313 Caenorhabditis elegans
Exon126700   375   IV: 6369787-6370161 Caenorhabditis elegans
Exon126706   347   IV: 6370595-6370941 Caenorhabditis elegans
Exon126712   873   IV: 6370993-6371865 Caenorhabditis elegans
Exon126718   93   IV: 6371910-6372002 Caenorhabditis elegans
Exon126724   230   IV: 6372055-6372284 Caenorhabditis elegans
Exon126730   212   IV: 6372334-6372545 Caenorhabditis elegans
Exon126736   179   IV: 6372601-6372779 Caenorhabditis elegans
Exon126740   263   IV: 6372827-6373089 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6BL.18b.1 6362431 6373089 -1

1 Sequence

Length
3699

1 Sequence Ontology Term

Identifier Name Description
transcript