WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C01G5.8a.1 Sequence Name  C01G5.8a.1
Length (nt)  2902   Chromosome Location  IV: 6548686-6552511
Chromosome . Primary Identifier  IV Chromosome Location . Start  6548686
Chromosome Location . End  6552511 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C01G5.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015310 fan-1 C01G5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C01G5.8a C01G5.8a 2598   IV: 6548914-6549021

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C01G5.8a.1 6548686 6552511 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127275   336   IV: 6548686-6549021 Caenorhabditis elegans
Exon127277   93   IV: 6549069-6549161 Caenorhabditis elegans
Exon127279   137   IV: 6549210-6549346 Caenorhabditis elegans
Exon127281   262   IV: 6549394-6549655 Caenorhabditis elegans
Exon127284   322   IV: 6549708-6550029 Caenorhabditis elegans
Exon127286   95   IV: 6550075-6550169 Caenorhabditis elegans
Exon127288   159   IV: 6550227-6550385 Caenorhabditis elegans
Exon127290   89   IV: 6550470-6550558 Caenorhabditis elegans
Exon127293   102   IV: 6550610-6550711 Caenorhabditis elegans
Exon127295   278   IV: 6550759-6551036 Caenorhabditis elegans
Exon127298   80   IV: 6551080-6551159 Caenorhabditis elegans
Exon127301   307   IV: 6551205-6551511 Caenorhabditis elegans
Exon127304   305   IV: 6551821-6552125 Caenorhabditis elegans
Exon127309   337   IV: 6552175-6552511 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C01G5.8a.1 6548686 6552511 1

1 Sequence

Length
2902

1 Sequence Ontology Term

Identifier Name Description
transcript