WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C43G2.4.2 Sequence Name  C43G2.4.2
Length (nt)  1800   Chromosome Location  IV: 6560734-6565270
Chromosome . Primary Identifier  IV Chromosome Location . Start  6560734
Chromosome Location . End  6565270 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C43G2.4.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016613 best-9 C43G2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C43G2.4 C43G2.4 1200   IV: 6562698-6562749

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C43G2.4.2 6560734 6565270 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127345   467   IV: 6560734-6561200 Caenorhabditis elegans
Exon127354   54   IV: 6562696-6562749 Caenorhabditis elegans
Exon127356   121   IV: 6562794-6562914 Caenorhabditis elegans
Exon127359   99   IV: 6562963-6563061 Caenorhabditis elegans
Exon127362   138   IV: 6563360-6563497 Caenorhabditis elegans
Exon127365   106   IV: 6563542-6563647 Caenorhabditis elegans
Exon127369   192   IV: 6563768-6563959 Caenorhabditis elegans
Exon127372   144   IV: 6564227-6564370 Caenorhabditis elegans
Exon127377   124   IV: 6564532-6564655 Caenorhabditis elegans
Exon127380   355   IV: 6564916-6565270 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C43G2.4.2 6560734 6565270 1

1 Sequence

Length
1800

1 Sequence Ontology Term

Identifier Name Description
transcript