WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C43G2.2a.1 Sequence Name  C43G2.2a.1
Length (nt)  3067   Chromosome Location  IV: 6565384-6572336
Chromosome . Primary Identifier  IV Chromosome Location . Start  6565384
Chromosome Location . End  6572336 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C43G2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016611 bicd-1 C43G2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C43G2.2a C43G2.2a 2214   IV: 6566229-6566348

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C43G2.2a.1 6565384 6572336 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127438   965   IV: 6565384-6566348 Caenorhabditis elegans
Exon127440   177   IV: 6567062-6567238 Caenorhabditis elegans
Exon127445   383   IV: 6568021-6568403 Caenorhabditis elegans
Exon127449   244   IV: 6569095-6569338 Caenorhabditis elegans
Exon127451   93   IV: 6569392-6569484 Caenorhabditis elegans
Exon127454   188   IV: 6569569-6569756 Caenorhabditis elegans
Exon127456   193   IV: 6570074-6570266 Caenorhabditis elegans
Exon127460   138   IV: 6570719-6570856 Caenorhabditis elegans
Exon127462   477   IV: 6571241-6571717 Caenorhabditis elegans
Exon127464   209   IV: 6572128-6572336 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C43G2.2a.1 6565384 6572336 -1

1 Sequence

Length
3067

1 Sequence Ontology Term

Identifier Name Description
transcript