WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38A5.2a.1 Sequence Name  F38A5.2a.1
Length (nt)  1765   Chromosome Location  IV: 6582739-6585400
Chromosome . Primary Identifier  IV Chromosome Location . Start  6582739
Chromosome Location . End  6585400 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018161 F38A5.2 F38A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A5.2a F38A5.2a 1359   IV: 6583145-6583145

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.2a.1 6582739 6585400 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127450   407   IV: 6582739-6583145 Caenorhabditis elegans
Exon127452   110   IV: 6583674-6583783 Caenorhabditis elegans
Exon127454   315   IV: 6583832-6584146 Caenorhabditis elegans
Exon127456   138   IV: 6584192-6584329 Caenorhabditis elegans
Exon127458   126   IV: 6584374-6584499 Caenorhabditis elegans
Exon127460   299   IV: 6584555-6584853 Caenorhabditis elegans
Exon127463   228   IV: 6584909-6585136 Caenorhabditis elegans
Exon127464   46   IV: 6585208-6585253 Caenorhabditis elegans
Exon127466   96   IV: 6585305-6585400 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.2a.1 6582739 6585400 -1

1 Sequence

Length
1765

1 Sequence Ontology Term

Identifier Name Description
transcript