WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38A5.6.1 Sequence Name  F38A5.6.1
Length (nt)  903   Chromosome Location  IV: 6596103-6597398
Chromosome . Primary Identifier  IV Chromosome Location . Start  6596103
Chromosome Location . End  6597398 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A5.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018163 F38A5.6 F38A5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A5.6 F38A5.6 792   IV: 6596162-6596254

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.6.1 6596103 6597398 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127503   152   IV: 6596103-6596254 Caenorhabditis elegans
Exon127504   153   IV: 6596302-6596454 Caenorhabditis elegans
Exon127505   119   IV: 6596502-6596620 Caenorhabditis elegans
Exon127508   70   IV: 6596675-6596744 Caenorhabditis elegans
Exon127509   195   IV: 6596788-6596982 Caenorhabditis elegans
Exon127510   152   IV: 6597139-6597290 Caenorhabditis elegans
Exon127511   62   IV: 6597337-6597398 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.6.1 6596103 6597398 -1

1 Sequence

Length
903

1 Sequence Ontology Term

Identifier Name Description
transcript