WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38A5.11.1 Sequence Name  F38A5.11.1
Length (nt)  1143   Chromosome Location  IV: 6590360-6594529
Chromosome . Primary Identifier  IV Chromosome Location . Start  6590360
Chromosome Location . End  6594529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A5.11.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018168 irld-7 F38A5.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A5.11 F38A5.11 1002   IV: 6592689-6592833

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.11.1 6590360 6594529 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127538   30   IV: 6590360-6590389 Caenorhabditis elegans
Exon127546   203   IV: 6592631-6592833 Caenorhabditis elegans
Exon127547   75   IV: 6592880-6592954 Caenorhabditis elegans
Exon127548   110   IV: 6593001-6593110 Caenorhabditis elegans
Exon127549   207   IV: 6593549-6593755 Caenorhabditis elegans
Exon127550   121   IV: 6593800-6593920 Caenorhabditis elegans
Exon127551   119   IV: 6593966-6594084 Caenorhabditis elegans
Exon127552   68   IV: 6594126-6594193 Caenorhabditis elegans
Exon127553   31   IV: 6594274-6594304 Caenorhabditis elegans
Exon127554   179   IV: 6594351-6594529 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.11.1 6590360 6594529 1

1 Sequence

Length
1143

1 Sequence Ontology Term

Identifier Name Description
transcript