WormMine: Gene WBGene00236785

• WormBase Gene ID: WBGene00236785
• Gene Name: Y73B6A.16
• Sequence Name: Y73B6A.16
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in RIR; excretory gland cell; phasmid neurons; spermathecal-uterine junction; and uterine-vulval cell based on single-cell RNA-seq studies. Is affected by adr-1; fzo-1; and camt-1 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 198

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00236785

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y73B6A.16	Y73B6A.16	198	IV: 6731973-6732170

Other

0 CDSs

3 RNAi Result

• WBRNAi00077953
• WBRNAi00021424
• WBRNAi00007642

6 Allele

• gk964500
• gk963722
• gk963417
• gk963416
• gk964489
• WBVar02124416

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00236785
• Start: 6731973
• End: 6732170
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_6732171..6732979
• Length (nt): 809
• Chromosome Location: IV: 6732171-6732979
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly altered expression at URX, AQR, and PQR neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.	RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.	WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
	Transcripts that showed significantly increased expression in zcIs13; twnEx320[Punc-119-ds-fzo-1] comparing to in zcIs13[Phsp-6-gfp] animals.	Fold change >= 1.5.	WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
	Transcripts that showed significantly decreased expression in 10-days post L4 adult hermaphrodite N2 grown at 20C, comparing to in 1-day post L4 adult hermaphrodite N2 animals grown at 20C.	CuffDiff, fold change > 2.	WBPaper00065096:Day10_vs_Day1_downregulated
	Single-cell RNA-Seq cell group 142_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:142_0
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Single-cell RNA-Seq cell group 146_0 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:146_0
	Single-cell RNA-Seq cell group 11_2 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:11_2
	Single-cell RNA-Seq cell group 47_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:47_0
	Single-cell RNA-Seq cell group 89_0 expressed in gland.	scVI 0.6.0	WBPaper00065841:89_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00236785
• Start: 6731973
• End: 6732170
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 198

1 Sequence Ontology Term