WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73B6A.5e.1 Sequence Name  Y73B6A.5e.1
Length (nt)  3105   Chromosome Location  IV: 6742539-6747780
Chromosome . Primary Identifier  IV Chromosome Location . Start  6742539
Chromosome Location . End  6747780 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6A.5e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003030 lin-45 Y73B6A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73B6A.5e Y73B6A.5e 2346   IV: 6743238-6743465

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6A.5e.1 6742539 6747780 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127814   927   IV: 6742539-6743465 Caenorhabditis elegans
Exon127822   412   IV: 6743987-6744398 Caenorhabditis elegans
Exon127828   97   IV: 6744448-6744544 Caenorhabditis elegans
Exon127834   259   IV: 6744591-6744849 Caenorhabditis elegans
Exon127840   123   IV: 6745067-6745189 Caenorhabditis elegans
Exon127846   215   IV: 6745235-6745449 Caenorhabditis elegans
Exon127852   124   IV: 6745623-6745746 Caenorhabditis elegans
Exon127858   300   IV: 6745797-6746096 Caenorhabditis elegans
Exon127864   261   IV: 6746456-6746716 Caenorhabditis elegans
Exon127870   123   IV: 6746769-6746891 Caenorhabditis elegans
Exon127877   183   IV: 6746943-6747125 Caenorhabditis elegans
Exon127881   81   IV: 6747700-6747780 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6A.5e.1 6742539 6747780 -1

1 Sequence

Length
3105

1 Sequence Ontology Term

Identifier Name Description
transcript