WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y73B6A.5d.1 Sequence Name  Y73B6A.5d.1
Length (nt)  3379   Chromosome Location  IV: 6742539-6747883
Chromosome . Primary Identifier  IV Chromosome Location . Start  6742539
Chromosome Location . End  6747883 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y73B6A.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003030 lin-45 Y73B6A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y73B6A.5d Y73B6A.5d 2517   IV: 6743238-6743465

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6A.5d.1 6742539 6747883 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127870   927   IV: 6742539-6743465 Caenorhabditis elegans
Exon127876   412   IV: 6743987-6744398 Caenorhabditis elegans
Exon127882   97   IV: 6744448-6744544 Caenorhabditis elegans
Exon127888   259   IV: 6744591-6744849 Caenorhabditis elegans
Exon127894   123   IV: 6745067-6745189 Caenorhabditis elegans
Exon127900   215   IV: 6745235-6745449 Caenorhabditis elegans
Exon127906   124   IV: 6745623-6745746 Caenorhabditis elegans
Exon127912   300   IV: 6745797-6746096 Caenorhabditis elegans
Exon127918   261   IV: 6746456-6746716 Caenorhabditis elegans
Exon127924   123   IV: 6746769-6746891 Caenorhabditis elegans
Exon127931   183   IV: 6746943-6747125 Caenorhabditis elegans
Exon127935   171   IV: 6747288-6747458 Caenorhabditis elegans
Exon127937   184   IV: 6747700-6747883 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y73B6A.5d.1 6742539 6747883 -1

1 Sequence

Length
3379

1 Sequence Ontology Term

Identifier Name Description
transcript