WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A12.2a.1 Sequence Name  T05A12.2a.1
Length (nt)  2145   Chromosome Location  IV: 6876731-6883442
Chromosome . Primary Identifier  IV Chromosome Location . Start  6876731
Chromosome Location . End  6883442 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A12.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006608 tre-2 T05A12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A12.2a T05A12.2a 2016   IV: 6876860-6877262

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A12.2a.1 6876731 6883442 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128323   532   IV: 6876731-6877262 Caenorhabditis elegans
Exon128326   272   IV: 6877313-6877584 Caenorhabditis elegans
Exon128329   217   IV: 6877632-6877848 Caenorhabditis elegans
Exon128332   188   IV: 6877902-6878089 Caenorhabditis elegans
Exon128335   145   IV: 6878140-6878284 Caenorhabditis elegans
Exon128338   114   IV: 6878334-6878447 Caenorhabditis elegans
Exon128341   80   IV: 6878496-6878575 Caenorhabditis elegans
Exon128344   87   IV: 6878631-6878717 Caenorhabditis elegans
Exon128348   140   IV: 6878767-6878906 Caenorhabditis elegans
Exon128351   168   IV: 6879263-6879430 Caenorhabditis elegans
Exon128353   160   IV: 6882799-6882958 Caenorhabditis elegans
Exon128354   42   IV: 6883401-6883442 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A12.2a.1 6876731 6883442 -1

1 Sequence

Length
2145

1 Sequence Ontology Term

Identifier Name Description
transcript