WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A12.2b.1 Sequence Name  T05A12.2b.1
Length (nt)  1758   Chromosome Location  IV: 6876860-6879374
Chromosome . Primary Identifier  IV Chromosome Location . Start  6876860
Chromosome Location . End  6879374 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A12.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006608 tre-2 T05A12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A12.2b T05A12.2b 1758   IV: 6876860-6877262

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A12.2b.1 6876860 6879374 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128325   403   IV: 6876860-6877262 Caenorhabditis elegans
Exon128327   272   IV: 6877313-6877584 Caenorhabditis elegans
Exon128330   217   IV: 6877632-6877848 Caenorhabditis elegans
Exon128333   188   IV: 6877902-6878089 Caenorhabditis elegans
Exon128336   145   IV: 6878140-6878284 Caenorhabditis elegans
Exon128339   114   IV: 6878334-6878447 Caenorhabditis elegans
Exon128342   80   IV: 6878496-6878575 Caenorhabditis elegans
Exon128345   87   IV: 6878631-6878717 Caenorhabditis elegans
Exon128349   140   IV: 6878767-6878906 Caenorhabditis elegans
Exon128350   112   IV: 6879263-6879374 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A12.2b.1 6876860 6879374 -1

1 Sequence

Length
1758

1 Sequence Ontology Term

Identifier Name Description
transcript