WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A12.3.1 Sequence Name  T05A12.3.1
Length (nt)  2330   Chromosome Location  IV: 6883576-6887651
Chromosome . Primary Identifier  IV Chromosome Location . Start  6883576
Chromosome Location . End  6887651 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A12.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020234 T05A12.3 T05A12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A12.3 T05A12.3 1968   IV: 6883917-6884091

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T05A12.3.1 6883576 6887651 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128355   516   IV: 6883576-6884091 Caenorhabditis elegans
Exon128356   101   IV: 6884224-6884324 Caenorhabditis elegans
Exon128357   380   IV: 6885321-6885700 Caenorhabditis elegans
Exon128358   182   IV: 6885924-6886105 Caenorhabditis elegans
Exon128359   108   IV: 6886154-6886261 Caenorhabditis elegans
Exon128360   150   IV: 6886314-6886463 Caenorhabditis elegans
Exon128361   102   IV: 6886509-6886610 Caenorhabditis elegans
Exon128362   105   IV: 6886662-6886766 Caenorhabditis elegans
Exon128363   167   IV: 6886813-6886979 Caenorhabditis elegans
Exon128364   294   IV: 6887035-6887328 Caenorhabditis elegans
Exon128365   141   IV: 6887371-6887511 Caenorhabditis elegans
Exon128366   84   IV: 6887568-6887651 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T05A12.3.1 6883576 6887651 -1

1 Sequence

Length
2330

1 Sequence Ontology Term

Identifier Name Description
transcript