WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0478.1a.1 Sequence Name  B0478.1a.1
Length (nt)  1554   Chromosome Location  IV: 6957641-6963718
Chromosome . Primary Identifier  IV Chromosome Location . Start  6957641
Chromosome Location . End  6963718 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0478.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002178 jnk-1 B0478.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0478.1a B0478.1a 1392   IV: 6957677-6957722

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0478.1a.1 6957641 6963718 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128554   82   IV: 6957641-6957722 Caenorhabditis elegans
Exon128559   110   IV: 6960209-6960318 Caenorhabditis elegans
Exon128562   159   IV: 6960727-6960885 Caenorhabditis elegans
Exon128565   86   IV: 6960933-6961018 Caenorhabditis elegans
Exon128568   130   IV: 6961142-6961271 Caenorhabditis elegans
Exon128571   198   IV: 6961321-6961518 Caenorhabditis elegans
Exon128574   166   IV: 6961797-6961962 Caenorhabditis elegans
Exon128577   99   IV: 6962123-6962221 Caenorhabditis elegans
Exon128580   79   IV: 6962270-6962348 Caenorhabditis elegans
Exon128583   77   IV: 6962406-6962482 Caenorhabditis elegans
Exon128586   116   IV: 6962526-6962641 Caenorhabditis elegans
Exon128593   252   IV: 6963467-6963718 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0478.1a.1 6957641 6963718 1

1 Sequence

Length
1554

1 Sequence Ontology Term

Identifier Name Description
transcript