WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:B0478.1c Sequence Name  B0478.1c
Length (nt)  2217   Chromosome Location  IV: 6957677-6963592
Chromosome . Primary Identifier  IV Chromosome Location . Start  6957677
Chromosome Location . End  6963592 Method  non_coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This NcPrimaryTranscript isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0478.1c

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002178 jnk-1 B0478.1 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0478.1c 6957677 6963592 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128555   46   IV: 6957677-6957722 Caenorhabditis elegans
Exon128560   110   IV: 6960209-6960318 Caenorhabditis elegans
Exon128564   159   IV: 6960727-6960885 Caenorhabditis elegans
Exon128567   86   IV: 6960933-6961018 Caenorhabditis elegans
Exon128570   130   IV: 6961142-6961271 Caenorhabditis elegans
Exon128573   198   IV: 6961321-6961518 Caenorhabditis elegans
Exon128576   166   IV: 6961797-6961962 Caenorhabditis elegans
Exon128579   99   IV: 6962123-6962221 Caenorhabditis elegans
Exon128582   79   IV: 6962270-6962348 Caenorhabditis elegans
Exon128585   77   IV: 6962406-6962482 Caenorhabditis elegans
Exon128588   1067   IV: 6962526-6963592 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0478.1c 6957677 6963592 1

1 Sequence

Length
2217

1 Sequence Ontology Term

Identifier Name Description
transcript