WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0478.1a.1 Sequence Name  B0478.1a.1
Length (nt)  1554   Chromosome Location  IV: 6957641-6963718
Chromosome . Primary Identifier  IV Chromosome Location . Start  6957641
Chromosome Location . End  6963718 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0478.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002178 jnk-1 B0478.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0478.1a B0478.1a 1392   IV: 6957677-6957722

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0478.1a.1 6957641 6963718 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128609   82   IV: 6957641-6957722 Caenorhabditis elegans
Exon128614   110   IV: 6960209-6960318 Caenorhabditis elegans
Exon128617   159   IV: 6960727-6960885 Caenorhabditis elegans
Exon128620   86   IV: 6960933-6961018 Caenorhabditis elegans
Exon128623   130   IV: 6961142-6961271 Caenorhabditis elegans
Exon128626   198   IV: 6961321-6961518 Caenorhabditis elegans
Exon128629   166   IV: 6961797-6961962 Caenorhabditis elegans
Exon128632   99   IV: 6962123-6962221 Caenorhabditis elegans
Exon128635   79   IV: 6962270-6962348 Caenorhabditis elegans
Exon128638   77   IV: 6962406-6962482 Caenorhabditis elegans
Exon128641   116   IV: 6962526-6962641 Caenorhabditis elegans
Exon128648   252   IV: 6963467-6963718 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0478.1a.1 6957641 6963718 1

1 Sequence

Length
1554

1 Sequence Ontology Term

Identifier Name Description
transcript