WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C25A8.4.1 Sequence Name  C25A8.4.1
Length (nt)  3243   Chromosome Location  IV: 7003623-7009268
Chromosome . Primary Identifier  IV Chromosome Location . Start  7003623
Chromosome Location . End  7009268 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C25A8.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016084 cht-3 C25A8.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C25A8.4 C25A8.4 3204   IV: 7003625-7003732

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C25A8.4.1 7003623 7009268 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128734   110   IV: 7003623-7003732 Caenorhabditis elegans
Exon128735   278   IV: 7003851-7004128 Caenorhabditis elegans
Exon128736   211   IV: 7004194-7004404 Caenorhabditis elegans
Exon128737   95   IV: 7004451-7004545 Caenorhabditis elegans
Exon128738   268   IV: 7004924-7005191 Caenorhabditis elegans
Exon128739   357   IV: 7005238-7005594 Caenorhabditis elegans
Exon128740   299   IV: 7005645-7005943 Caenorhabditis elegans
Exon128741   378   IV: 7005990-7006367 Caenorhabditis elegans
Exon128742   272   IV: 7006655-7006926 Caenorhabditis elegans
Exon128744   128   IV: 7007006-7007133 Caenorhabditis elegans
Exon128745   91   IV: 7007176-7007266 Caenorhabditis elegans
Exon128746   104   IV: 7007593-7007696 Caenorhabditis elegans
Exon128747   89   IV: 7007742-7007830 Caenorhabditis elegans
Exon128748   394   IV: 7007881-7008274 Caenorhabditis elegans
Exon128750   169   IV: 7009100-7009268 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C25A8.4.1 7003623 7009268 1

1 Sequence

Length
3243

1 Sequence Ontology Term

Identifier Name Description
transcript