WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06G3.1a.1 Sequence Name  C06G3.1a.1
Length (nt)  1382   Chromosome Location  IV: 7050156-7053450
Chromosome . Primary Identifier  IV Chromosome Location . Start  7050156
Chromosome Location . End  7053450 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06G3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003695 nhr-105 C06G3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06G3.1a C06G3.1a 1290   IV: 7050163-7050223

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06G3.1a.1 7050156 7053450 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128841   68   IV: 7050156-7050223 Caenorhabditis elegans
Exon128843   195   IV: 7050936-7051130 Caenorhabditis elegans
Exon128845   72   IV: 7051182-7051253 Caenorhabditis elegans
Exon128848   101   IV: 7051549-7051649 Caenorhabditis elegans
Exon128850   144   IV: 7051728-7051871 Caenorhabditis elegans
Exon128852   126   IV: 7051953-7052078 Caenorhabditis elegans
Exon128854   89   IV: 7052126-7052214 Caenorhabditis elegans
Exon128856   206   IV: 7052262-7052467 Caenorhabditis elegans
Exon128859   158   IV: 7053019-7053176 Caenorhabditis elegans
Exon128861   223   IV: 7053228-7053450 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06G3.1a.1 7050156 7053450 1

1 Sequence

Length
1382

1 Sequence Ontology Term

Identifier Name Description
transcript