WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC477.9d.1 Sequence Name  ZC477.9d.1
Length (nt)  3630   Chromosome Location  IV: 7085331-7094266
Chromosome . Primary Identifier  IV Chromosome Location . Start  7085331
Chromosome Location . End  7094266 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC477.9d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000942 deb-1 ZC477.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC477.9d ZC477.9d 3273   IV: 7085688-7085857

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:ZC477.9d.1 7085331 7094266 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128929   527   IV: 7085331-7085857 Caenorhabditis elegans
Exon128936   33   IV: 7086067-7086099 Caenorhabditis elegans
Exon128941   91   IV: 7086183-7086273 Caenorhabditis elegans
Exon128949   102   IV: 7086327-7086428 Caenorhabditis elegans
Exon128959   375   IV: 7086477-7086851 Caenorhabditis elegans
Exon128965   203   IV: 7087469-7087671 Caenorhabditis elegans
Exon128973   193   IV: 7089287-7089479 Caenorhabditis elegans
Exon128977   85   IV: 7089537-7089621 Caenorhabditis elegans
Exon128981   308   IV: 7089830-7090137 Caenorhabditis elegans
Exon128985   172   IV: 7090241-7090412 Caenorhabditis elegans
Exon128989   108   IV: 7090514-7090621 Caenorhabditis elegans
Exon128993   710   IV: 7090673-7091382 Caenorhabditis elegans
Exon128997   198   IV: 7091430-7091627 Caenorhabditis elegans
Exon129001   120   IV: 7091678-7091797 Caenorhabditis elegans
Exon129006   108   IV: 7092417-7092524 Caenorhabditis elegans
Exon129008   240   IV: 7092787-7093026 Caenorhabditis elegans
Exon129014   57   IV: 7094210-7094266 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:ZC477.9d.1 7085331 7094266 -1

1 Sequence

Length
3630

1 Sequence Ontology Term

Identifier Name Description
transcript