WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D4.2.1 Sequence Name  C42D4.2.1
Length (nt)  1957   Chromosome Location  IV: 7180557-7182993
Chromosome . Primary Identifier  IV Chromosome Location . Start  7180557
Chromosome Location . End  7182993 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D4.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016595 cest-10 C42D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D4.2 C42D4.2 1740   IV: 7180566-7180785

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42D4.2.1 7180557 7182993 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129434   229   IV: 7180557-7180785 Caenorhabditis elegans
Exon129435   107   IV: 7180829-7180935 Caenorhabditis elegans
Exon129436   109   IV: 7181041-7181149 Caenorhabditis elegans
Exon129437   96   IV: 7181203-7181298 Caenorhabditis elegans
Exon129438   145   IV: 7181342-7181486 Caenorhabditis elegans
Exon129439   192   IV: 7181530-7181721 Caenorhabditis elegans
Exon129440   251   IV: 7181764-7182014 Caenorhabditis elegans
Exon129441   86   IV: 7182064-7182149 Caenorhabditis elegans
Exon129442   267   IV: 7182201-7182467 Caenorhabditis elegans
Exon129443   475   IV: 7182519-7182993 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42D4.2.1 7180557 7182993 1

1 Sequence

Length
1957

1 Sequence Ontology Term

Identifier Name Description
transcript