WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A1.4d.1 Sequence Name  R13A1.4d.1
Length (nt)  2214   Chromosome Location  IV: 7199556-7203498
Chromosome . Primary Identifier  IV Chromosome Location . Start  7199556
Chromosome Location . End  7203498 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A1.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006748 unc-8 R13A1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A1.4d R13A1.4d 2214   IV: 7199556-7199645

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R13A1.4d.1 7199556 7203498 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129551   90   IV: 7199556-7199645 Caenorhabditis elegans
Exon129555   149   IV: 7200161-7200309 Caenorhabditis elegans
Exon129559   143   IV: 7200360-7200502 Caenorhabditis elegans
Exon129563   83   IV: 7200547-7200629 Caenorhabditis elegans
Exon129567   92   IV: 7200686-7200777 Caenorhabditis elegans
Exon129571   139   IV: 7200824-7200962 Caenorhabditis elegans
Exon129575   87   IV: 7201047-7201133 Caenorhabditis elegans
Exon129579   138   IV: 7201176-7201313 Caenorhabditis elegans
Exon129583   102   IV: 7201358-7201459 Caenorhabditis elegans
Exon129587   158   IV: 7201507-7201664 Caenorhabditis elegans
Exon129591   101   IV: 7201709-7201809 Caenorhabditis elegans
Exon129595   161   IV: 7201873-7202033 Caenorhabditis elegans
Exon129599   93   IV: 7202079-7202171 Caenorhabditis elegans
Exon129603   118   IV: 7202216-7202333 Caenorhabditis elegans
Exon129607   144   IV: 7202706-7202849 Caenorhabditis elegans
Exon129611   140   IV: 7202896-7203035 Caenorhabditis elegans
Exon129615   96   IV: 7203172-7203267 Caenorhabditis elegans
Exon129618   180   IV: 7203319-7203498 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R13A1.4d.1 7199556 7203498 1

1 Sequence

Length
2214

1 Sequence Ontology Term

Identifier Name Description
transcript