WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A1.2c.1 Sequence Name  R13A1.2c.1
Length (nt)  4248   Chromosome Location  IV: 7206269-7218001
Chromosome . Primary Identifier  IV Chromosome Location . Start  7206269
Chromosome Location . End  7218001 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A1.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006504 kcc-1 R13A1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A1.2c R13A1.2c 3471   IV: 7206269-7206399

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A1.2c.1 7206269 7218001 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129574   131   IV: 7206269-7206399 Caenorhabditis elegans
Exon129575   108   IV: 7207364-7207471 Caenorhabditis elegans
Exon129580   90   IV: 7209915-7210004 Caenorhabditis elegans
Exon129583   56   IV: 7210064-7210119 Caenorhabditis elegans
Exon129592   311   IV: 7213644-7213954 Caenorhabditis elegans
Exon129597   241   IV: 7214046-7214286 Caenorhabditis elegans
Exon129602   110   IV: 7214333-7214442 Caenorhabditis elegans
Exon129607   86   IV: 7214493-7214578 Caenorhabditis elegans
Exon129612   93   IV: 7214628-7214720 Caenorhabditis elegans
Exon129617   414   IV: 7214767-7215180 Caenorhabditis elegans
Exon129622   393   IV: 7215233-7215625 Caenorhabditis elegans
Exon129627   358   IV: 7215680-7216037 Caenorhabditis elegans
Exon129632   970   IV: 7216096-7217065 Caenorhabditis elegans
Exon129638   887   IV: 7217115-7218001 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A1.2c.1 7206269 7218001 1

1 Sequence

Length
4248

1 Sequence Ontology Term

Identifier Name Description
transcript