WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A1.2e.1 Sequence Name  R13A1.2e.1
Length (nt)  3201   Chromosome Location  IV: 7209946-7217224
Chromosome . Primary Identifier  IV Chromosome Location . Start  7209946
Chromosome Location . End  7217224 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A1.2e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006504 kcc-1 R13A1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A1.2e R13A1.2e 3201   IV: 7209946-7210004

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R13A1.2e.1 7209946 7217224 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129582   59   IV: 7209946-7210004 Caenorhabditis elegans
Exon129585   56   IV: 7210064-7210119 Caenorhabditis elegans
Exon129594   311   IV: 7213644-7213954 Caenorhabditis elegans
Exon129599   241   IV: 7214046-7214286 Caenorhabditis elegans
Exon129604   110   IV: 7214333-7214442 Caenorhabditis elegans
Exon129609   86   IV: 7214493-7214578 Caenorhabditis elegans
Exon129614   93   IV: 7214628-7214720 Caenorhabditis elegans
Exon129619   414   IV: 7214767-7215180 Caenorhabditis elegans
Exon129624   393   IV: 7215233-7215625 Caenorhabditis elegans
Exon129629   358   IV: 7215680-7216037 Caenorhabditis elegans
Exon129634   970   IV: 7216096-7217065 Caenorhabditis elegans
Exon129637   110   IV: 7217115-7217224 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R13A1.2e.1 7209946 7217224 1

1 Sequence

Length
3201

1 Sequence Ontology Term

Identifier Name Description
transcript