WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y40C5A.2 Sequence Name  Y40C5A.2
Length (nt)  2271   Chromosome Location  IV: 7329679-7329852
Chromosome . Primary Identifier  IV Chromosome Location . Start  7329679
Chromosome Location . End  7329852
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.2

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE40877 OCR-4 86.7 756 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00056324
WBRNAi00020448
WBRNAi00036981
WBRNAi00103593

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y40C5A.2 7329679 7329852 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003841 ocr-4 Y40C5A.2 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y40C5A.2 7329679 7329852 -1
CDS:Y40C5A.2 7329900 7330145 -1
CDS:Y40C5A.2 7330220 7330499 -1
CDS:Y40C5A.2 7330552 7330811 -1
CDS:Y40C5A.2 7330853 7331018 -1
CDS:Y40C5A.2 7331264 7331499 -1
CDS:Y40C5A.2 7331546 7331647 -1
CDS:Y40C5A.2 7331690 7331843 -1
CDS:Y40C5A.2 7332051 7332532 -1
CDS:Y40C5A.2 7332574 7332744 -1

1 Sequence

Length
2271

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y40C5A.2.1 Y40C5A.2.1 2390   IV: 7329611-7332795