WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42C5.10.1 Sequence Name  F42C5.10.1
Length (nt)  4037   Chromosome Location  IV: 7320734-7326663
Chromosome . Primary Identifier  IV Chromosome Location . Start  7320734
Chromosome Location . End  7326663 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42C5.10.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018350 ifo-1 F42C5.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42C5.10 F42C5.10 3879   IV: 7320891-7321060

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42C5.10.1 7320734 7326663 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129900   327   IV: 7320734-7321060 Caenorhabditis elegans
Exon129901   186   IV: 7321141-7321326 Caenorhabditis elegans
Exon129902   83   IV: 7321378-7321460 Caenorhabditis elegans
Exon129903   139   IV: 7321508-7321646 Caenorhabditis elegans
Exon129904   495   IV: 7321694-7322188 Caenorhabditis elegans
Exon129905   249   IV: 7322236-7322484 Caenorhabditis elegans
Exon129906   420   IV: 7322533-7322952 Caenorhabditis elegans
Exon129907   1000   IV: 7323284-7324283 Caenorhabditis elegans
Exon129908   97   IV: 7324382-7324478 Caenorhabditis elegans
Exon129909   806   IV: 7324521-7325326 Caenorhabditis elegans
Exon129910   66   IV: 7325745-7325810 Caenorhabditis elegans
Exon129911   75   IV: 7326444-7326518 Caenorhabditis elegans
Exon129912   94   IV: 7326570-7326663 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42C5.10.1 7320734 7326663 -1

1 Sequence

Length
4037

1 Sequence Ontology Term

Identifier Name Description
transcript