WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40C5A.3c.1 Sequence Name  Y40C5A.3c.1
Length (nt)  4071   Chromosome Location  IV: 7333638-7346851
Chromosome . Primary Identifier  IV Chromosome Location . Start  7333638
Chromosome Location . End  7346851 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021496 daf-42 Y40C5A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40C5A.3c Y40C5A.3c 4071   IV: 7333638-7333683

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y40C5A.3c.1 7333638 7346851 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129878   46   IV: 7333638-7333683 Caenorhabditis elegans
Exon129897   77   IV: 7333730-7333806 Caenorhabditis elegans
Exon129914   396   IV: 7333858-7334253 Caenorhabditis elegans
Exon129931   271   IV: 7334332-7334602 Caenorhabditis elegans
Exon129948   63   IV: 7334684-7334746 Caenorhabditis elegans
Exon129994   150   IV: 7335561-7335710 Caenorhabditis elegans
Exon130011   223   IV: 7335755-7335977 Caenorhabditis elegans
Exon130028   345   IV: 7336025-7336369 Caenorhabditis elegans
Exon130059   75   IV: 7336664-7336738 Caenorhabditis elegans
Exon130075   198   IV: 7336784-7336981 Caenorhabditis elegans
Exon130092   1131   IV: 7339843-7340973 Caenorhabditis elegans
Exon130108   63   IV: 7341121-7341183 Caenorhabditis elegans
Exon130125   606   IV: 7341492-7342097 Caenorhabditis elegans
Exon130140   69   IV: 7342157-7342225 Caenorhabditis elegans
Exon130156   43   IV: 7342323-7342365 Caenorhabditis elegans
Exon130173   98   IV: 7342452-7342549 Caenorhabditis elegans
Exon130203   94   IV: 7342964-7343057 Caenorhabditis elegans
Exon130221   37   IV: 7343105-7343141 Caenorhabditis elegans
Exon130243   86   IV: 7346766-7346851 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y40C5A.3c.1 7333638 7346851 -1

1 Sequence

Length
4071

1 Sequence Ontology Term

Identifier Name Description
transcript