WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40C5A.3e.1 Sequence Name  Y40C5A.3e.1
Length (nt)  4110   Chromosome Location  IV: 7333638-7346851
Chromosome . Primary Identifier  IV Chromosome Location . Start  7333638
Chromosome Location . End  7346851 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021496 daf-42 Y40C5A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40C5A.3e Y40C5A.3e 4110   IV: 7333638-7333683

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y40C5A.3e.1 7333638 7346851 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129890   46   IV: 7333638-7333683 Caenorhabditis elegans
Exon129899   77   IV: 7333730-7333806 Caenorhabditis elegans
Exon129916   396   IV: 7333858-7334253 Caenorhabditis elegans
Exon129933   271   IV: 7334332-7334602 Caenorhabditis elegans
Exon129950   63   IV: 7334684-7334746 Caenorhabditis elegans
Exon129996   150   IV: 7335561-7335710 Caenorhabditis elegans
Exon130013   223   IV: 7335755-7335977 Caenorhabditis elegans
Exon130030   345   IV: 7336025-7336369 Caenorhabditis elegans
Exon130045   39   IV: 7336522-7336560 Caenorhabditis elegans
Exon130061   75   IV: 7336664-7336738 Caenorhabditis elegans
Exon130077   198   IV: 7336784-7336981 Caenorhabditis elegans
Exon130094   1131   IV: 7339843-7340973 Caenorhabditis elegans
Exon130110   63   IV: 7341121-7341183 Caenorhabditis elegans
Exon130126   606   IV: 7341492-7342097 Caenorhabditis elegans
Exon130142   69   IV: 7342157-7342225 Caenorhabditis elegans
Exon130158   43   IV: 7342323-7342365 Caenorhabditis elegans
Exon130175   98   IV: 7342452-7342549 Caenorhabditis elegans
Exon130205   94   IV: 7342964-7343057 Caenorhabditis elegans
Exon130223   37   IV: 7343105-7343141 Caenorhabditis elegans
Exon130245   86   IV: 7346766-7346851 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y40C5A.3e.1 7333638 7346851 -1

1 Sequence

Length
4110

1 Sequence Ontology Term

Identifier Name Description
transcript