WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40C5A.4b.1 Sequence Name  Y40C5A.4b.1
Length (nt)  2272   Chromosome Location  IV: 7349280-7365111
Chromosome . Primary Identifier  IV Chromosome Location . Start  7349280
Chromosome Location . End  7365111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021497 Y40C5A.4 Y40C5A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40C5A.4b Y40C5A.4b 1278   IV: 7349375-7349476

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40C5A.4b.1 7349280 7365111 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130264   197   IV: 7349280-7349476 Caenorhabditis elegans
Exon130272   150   IV: 7349895-7350044 Caenorhabditis elegans
Exon130278   138   IV: 7350100-7350237 Caenorhabditis elegans
Exon130284   115   IV: 7350574-7350688 Caenorhabditis elegans
Exon130291   100   IV: 7351408-7351507 Caenorhabditis elegans
Exon130297   133   IV: 7351556-7351688 Caenorhabditis elegans
Exon130303   264   IV: 7351743-7352006 Caenorhabditis elegans
Exon130308   284   IV: 7352179-7352462 Caenorhabditis elegans
Exon130316   426   IV: 7363980-7364405 Caenorhabditis elegans
Exon130321   275   IV: 7364598-7364872 Caenorhabditis elegans
Exon130328   190   IV: 7364922-7365111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40C5A.4b.1 7349280 7365111 -1

1 Sequence

Length
2272

1 Sequence Ontology Term

Identifier Name Description
transcript