WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:Y40C5A.4c Sequence Name  Y40C5A.4c
Length (nt)  2152   Chromosome Location  IV: 7349375-7365086
Chromosome . Primary Identifier  IV Chromosome Location . Start  7349375
Chromosome Location . End  7365086 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.4c

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021497 Y40C5A.4 Y40C5A.4 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y40C5A.4c 7349375 7365086 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130265   102   IV: 7349375-7349476 Caenorhabditis elegans
Exon130274   150   IV: 7349895-7350044 Caenorhabditis elegans
Exon130280   138   IV: 7350100-7350237 Caenorhabditis elegans
Exon130286   115   IV: 7350574-7350688 Caenorhabditis elegans
Exon130293   100   IV: 7351408-7351507 Caenorhabditis elegans
Exon130299   133   IV: 7351556-7351688 Caenorhabditis elegans
Exon130305   264   IV: 7351743-7352006 Caenorhabditis elegans
Exon130309   284   IV: 7352179-7352462 Caenorhabditis elegans
Exon130318   426   IV: 7363980-7364405 Caenorhabditis elegans
Exon130323   275   IV: 7364598-7364872 Caenorhabditis elegans
Exon130325   165   IV: 7364922-7365086 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y40C5A.4c 7349375 7365086 -1

1 Sequence

Length
2152

1 Sequence Ontology Term

Identifier Name Description
transcript