WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40C5A.4a.1 Sequence Name  Y40C5A.4a.1
Length (nt)  2329   Chromosome Location  IV: 7349277-7365111
Chromosome . Primary Identifier  IV Chromosome Location . Start  7349277
Chromosome Location . End  7365111 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40C5A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021497 Y40C5A.4 Y40C5A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40C5A.4a Y40C5A.4a 1224   IV: 7349762-7349809

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40C5A.4a.1 7349277 7365111 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130316   200   IV: 7349277-7349476 Caenorhabditis elegans
Exon130322   54   IV: 7349756-7349809 Caenorhabditis elegans
Exon130324   150   IV: 7349895-7350044 Caenorhabditis elegans
Exon130330   138   IV: 7350100-7350237 Caenorhabditis elegans
Exon130336   115   IV: 7350574-7350688 Caenorhabditis elegans
Exon130343   100   IV: 7351408-7351507 Caenorhabditis elegans
Exon130349   133   IV: 7351556-7351688 Caenorhabditis elegans
Exon130355   264   IV: 7351743-7352006 Caenorhabditis elegans
Exon130361   284   IV: 7352179-7352462 Caenorhabditis elegans
Exon130369   426   IV: 7363980-7364405 Caenorhabditis elegans
Exon130374   275   IV: 7364598-7364872 Caenorhabditis elegans
Exon130381   190   IV: 7364922-7365111 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40C5A.4a.1 7349277 7365111 -1

1 Sequence

Length
2329

1 Sequence Ontology Term

Identifier Name Description
transcript