WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:C48A7.2c Sequence Name  C48A7.2c
Length (nt)  1766   Chromosome Location  IV: 7394097-7396726
Chromosome . Primary Identifier  IV Chromosome Location . Start  7394097
Chromosome Location . End  7396726 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48A7.2c

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016739 pitr-1 C48A7.2 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C48A7.2c 7394097 7396726 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130378   117   IV: 7394097-7394213 Caenorhabditis elegans
Exon130380   67   IV: 7394262-7394328 Caenorhabditis elegans
Exon130382   279   IV: 7394588-7394866 Caenorhabditis elegans
Exon130386   86   IV: 7394943-7395028 Caenorhabditis elegans
Exon130389   97   IV: 7395089-7395185 Caenorhabditis elegans
Exon130392   919   IV: 7395233-7396151 Caenorhabditis elegans
Exon130397   106   IV: 7396195-7396300 Caenorhabditis elegans
Exon130399   95   IV: 7396632-7396726 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C48A7.2c 7394097 7396726 1

1 Sequence

Length
1766

1 Sequence Ontology Term

Identifier Name Description
transcript