WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48A7.1b.1 Sequence Name  C48A7.1b.1
Length (nt)  6465   Chromosome Location  IV: 7405582-7418740
Chromosome . Primary Identifier  IV Chromosome Location . Start  7405582
Chromosome Location . End  7418740 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48A7.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001187 egl-19 C48A7.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48A7.1b C48A7.1b 5634   IV: 7405582-7405588

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C48A7.1b.1 7405582 7418740 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130431   7   IV: 7405582-7405588 Caenorhabditis elegans
Exon130434   92   IV: 7406131-7406222 Caenorhabditis elegans
Exon130439   164   IV: 7407983-7408146 Caenorhabditis elegans
Exon130441   106   IV: 7408201-7408306 Caenorhabditis elegans
Exon130443   140   IV: 7408830-7408969 Caenorhabditis elegans
Exon130445   1007   IV: 7409023-7410029 Caenorhabditis elegans
Exon130447   847   IV: 7410248-7411094 Caenorhabditis elegans
Exon130449   124   IV: 7411184-7411307 Caenorhabditis elegans
Exon130451   1403   IV: 7411354-7412756 Caenorhabditis elegans
Exon130453   500   IV: 7413032-7413531 Caenorhabditis elegans
Exon130455   105   IV: 7413706-7413810 Caenorhabditis elegans
Exon130457   137   IV: 7413959-7414095 Caenorhabditis elegans
Exon130461   105   IV: 7414598-7414702 Caenorhabditis elegans
Exon130463   109   IV: 7415858-7415966 Caenorhabditis elegans
Exon130465   256   IV: 7416146-7416401 Caenorhabditis elegans
Exon130469   282   IV: 7416675-7416956 Caenorhabditis elegans
Exon130473   1081   IV: 7417660-7418740 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C48A7.1b.1 7405582 7418740 1

1 Sequence

Length
6465

1 Sequence Ontology Term

Identifier Name Description
transcript