WormMine: Gene WBGene00199787

• WormBase Gene ID: WBGene00199787
• Gene Name: B0496.17
• Sequence Name: B0496.17
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AFD based on RNA-seq studies. Is affected by camt-1 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 129

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00199787

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:B0496.17	B0496.17	129	IV: 7420987-7421115

Other

0 CDSs

0 RNAi Result

6 Allele

• gk964500
• gk963722
• gk963417
• gk963416
• gk205445
• gk444796

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00199787
• Start: 7420987
• End: 7421115
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_7420076..7420986
• Length (nt): 911
• Chromosome Location: IV: 7420076-7420986
• Organism: Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage.	Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00065158:AFD_enriched
	Transcripts that showed significantly altered expression at AFD neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.	RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.	WBPaper00061902:camt-1(ok515)_regulated_AFD

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00199787
• Start: 7420987
• End: 7421115
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 129

1 Sequence Ontology Term