WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55G1.4.1 Sequence Name  F55G1.4.1
Length (nt)  6151   Chromosome Location  IV: 7478452-7485327
Chromosome . Primary Identifier  IV Chromosome Location . Start  7478452
Chromosome Location . End  7485327 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55G1.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018900 rod-1 F55G1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55G1.4 F55G1.4 6150   IV: 7478453-7478549

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55G1.4.1 7478452 7485327 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130866   98   IV: 7478452-7478549 Caenorhabditis elegans
Exon130867   153   IV: 7478605-7478757 Caenorhabditis elegans
Exon130868   296   IV: 7478805-7479100 Caenorhabditis elegans
Exon130869   393   IV: 7479158-7479550 Caenorhabditis elegans
Exon130870   669   IV: 7479594-7480262 Caenorhabditis elegans
Exon130871   201   IV: 7480314-7480514 Caenorhabditis elegans
Exon130872   1302   IV: 7480563-7481864 Caenorhabditis elegans
Exon130873   249   IV: 7481912-7482160 Caenorhabditis elegans
Exon130874   502   IV: 7482205-7482706 Caenorhabditis elegans
Exon130875   415   IV: 7482750-7483164 Caenorhabditis elegans
Exon130876   181   IV: 7483210-7483390 Caenorhabditis elegans
Exon130877   162   IV: 7483439-7483600 Caenorhabditis elegans
Exon130878   273   IV: 7483647-7483919 Caenorhabditis elegans
Exon130879   729   IV: 7483972-7484700 Caenorhabditis elegans
Exon130880   284   IV: 7484749-7485032 Caenorhabditis elegans
Exon130881   244   IV: 7485084-7485327 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55G1.4.1 7478452 7485327 1

1 Sequence

Length
6151

1 Sequence Ontology Term

Identifier Name Description
transcript