WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55G1.13.1 Sequence Name  F55G1.13.1
Length (nt)  2761   Chromosome Location  IV: 7493743-7497850
Chromosome . Primary Identifier  IV Chromosome Location . Start  7493743
Chromosome Location . End  7497850 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55G1.13.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018906 egas-4 F55G1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55G1.13 F55G1.13 2652   IV: 7493843-7493974

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F55G1.13.1 7493743 7497850 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130947   232   IV: 7493743-7493974 Caenorhabditis elegans
Exon130948   129   IV: 7494020-7494148 Caenorhabditis elegans
Exon130949   128   IV: 7494613-7494740 Caenorhabditis elegans
Exon130950   106   IV: 7494788-7494893 Caenorhabditis elegans
Exon130951   96   IV: 7494947-7495042 Caenorhabditis elegans
Exon130952   268   IV: 7495088-7495355 Caenorhabditis elegans
Exon130953   155   IV: 7495399-7495553 Caenorhabditis elegans
Exon130954   65   IV: 7495599-7495663 Caenorhabditis elegans
Exon130955   129   IV: 7495709-7495837 Caenorhabditis elegans
Exon130956   123   IV: 7495885-7496007 Caenorhabditis elegans
Exon130957   126   IV: 7496063-7496188 Caenorhabditis elegans
Exon130958   114   IV: 7496246-7496359 Caenorhabditis elegans
Exon130959   321   IV: 7496402-7496722 Caenorhabditis elegans
Exon130960   78   IV: 7496769-7496846 Caenorhabditis elegans
Exon130961   282   IV: 7496891-7497172 Caenorhabditis elegans
Exon130962   114   IV: 7497221-7497334 Caenorhabditis elegans
Exon130963   244   IV: 7497391-7497634 Caenorhabditis elegans
Exon130964   51   IV: 7497800-7497850 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F55G1.13.1 7493743 7497850 -1

1 Sequence

Length
2761

1 Sequence Ontology Term

Identifier Name Description
transcript