WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E8.3a.3 Sequence Name  F49E8.3a.3
Length (nt)  2967   Chromosome Location  IV: 7543976-7550191
Chromosome . Primary Identifier  IV Chromosome Location . Start  7543976
Chromosome Location . End  7550191 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E8.3a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003914 pam-1 F49E8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E8.3a F49E8.3a 2655   IV: 7544140-7544226

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E8.3a.3 7543976 7550191 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131037   251   IV: 7543976-7544226 Caenorhabditis elegans
Exon131043   661   IV: 7544273-7544933 Caenorhabditis elegans
Exon131048   929   IV: 7544980-7545908 Caenorhabditis elegans
Exon131052   235   IV: 7545954-7546188 Caenorhabditis elegans
Exon131056   639   IV: 7546265-7546903 Caenorhabditis elegans
Exon131060   105   IV: 7547013-7547117 Caenorhabditis elegans
Exon131079   147   IV: 7550045-7550191 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E8.3a.3 7543976 7550191 -1

1 Sequence

Length
2967

1 Sequence Ontology Term

Identifier Name Description
transcript