WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F45E4.3c.1 Sequence Name  F45E4.3c.1
Length (nt)  6744   Chromosome Location  IV: 7610680-7623552
Chromosome . Primary Identifier  IV Chromosome Location . Start  7610680
Chromosome Location . End  7623552 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F45E4.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018468 cla-1 F45E4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45E4.3c F45E4.3c 6744   IV: 7610680-7610762

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F45E4.3c.1 7610680 7623552 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131222   83   IV: 7610680-7610762 Caenorhabditis elegans
Exon131226   62   IV: 7610836-7610897 Caenorhabditis elegans
Exon131230   69   IV: 7611276-7611344 Caenorhabditis elegans
Exon131234   314   IV: 7611439-7611752 Caenorhabditis elegans
Exon131238   45   IV: 7612643-7612687 Caenorhabditis elegans
Exon131242   50   IV: 7612960-7613009 Caenorhabditis elegans
Exon131246   48   IV: 7613055-7613102 Caenorhabditis elegans
Exon131250   417   IV: 7613223-7613639 Caenorhabditis elegans
Exon131254   513   IV: 7614014-7614526 Caenorhabditis elegans
Exon131258   285   IV: 7614574-7614858 Caenorhabditis elegans
Exon131262   349   IV: 7615133-7615481 Caenorhabditis elegans
Exon131266   190   IV: 7615730-7615919 Caenorhabditis elegans
Exon131270   85   IV: 7615964-7616048 Caenorhabditis elegans
Exon131274   209   IV: 7616487-7616695 Caenorhabditis elegans
Exon131278   581   IV: 7616752-7617332 Caenorhabditis elegans
Exon131282   704   IV: 7617424-7618127 Caenorhabditis elegans
Exon131287   202   IV: 7618837-7619038 Caenorhabditis elegans
Exon131295   2538   IV: 7621015-7623552 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F45E4.3c.1 7610680 7623552 1

1 Sequence

Length
6744

1 Sequence Ontology Term

Identifier Name Description
transcript