WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F45E4.10a.1 Sequence Name  F45E4.10a.1
Length (nt)  2442   Chromosome Location  IV: 7646320-7651037
Chromosome . Primary Identifier  IV Chromosome Location . Start  7646320
Chromosome Location . End  7651037 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F45E4.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001584 nrde-4 F45E4.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45E4.10a F45E4.10a 2343   IV: 7646419-7646733

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F45E4.10a.1 7646320 7651037 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131393   414   IV: 7646320-7646733 Caenorhabditis elegans
Exon131395   326   IV: 7647027-7647352 Caenorhabditis elegans
Exon131397   89   IV: 7647399-7647487 Caenorhabditis elegans
Exon131399   176   IV: 7647538-7647713 Caenorhabditis elegans
Exon131401   339   IV: 7647762-7648100 Caenorhabditis elegans
Exon131403   119   IV: 7648545-7648663 Caenorhabditis elegans
Exon131405   76   IV: 7648709-7648784 Caenorhabditis elegans
Exon131407   114   IV: 7648846-7648959 Caenorhabditis elegans
Exon131409   309   IV: 7649008-7649316 Caenorhabditis elegans
Exon131411   379   IV: 7649969-7650347 Caenorhabditis elegans
Exon131414   69   IV: 7650400-7650468 Caenorhabditis elegans
Exon131415   32   IV: 7651006-7651037 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F45E4.10a.1 7646320 7651037 -1

1 Sequence

Length
2442

1 Sequence Ontology Term

Identifier Name Description
transcript