WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F33D4.2a.1 Sequence Name  F33D4.2a.1
Length (nt)  8906   Chromosome Location  IV: 7675174-7696930
Chromosome . Primary Identifier  IV Chromosome Location . Start  7675174
Chromosome Location . End  7696930 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F33D4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002173 itr-1 F33D4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F33D4.2a F33D4.2a 8679   IV: 7675174-7675252

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2a.1 7675174 7696930 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

33 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131482   79   IV: 7675174-7675252 Caenorhabditis elegans
Exon131484   103   IV: 7677479-7677581 Caenorhabditis elegans
Exon131491   144   IV: 7681709-7681852 Caenorhabditis elegans
Exon131497   208   IV: 7681906-7682113 Caenorhabditis elegans
Exon131503   150   IV: 7682273-7682422 Caenorhabditis elegans
Exon131509   288   IV: 7682825-7683112 Caenorhabditis elegans
Exon131515   159   IV: 7683159-7683317 Caenorhabditis elegans
Exon131522   158   IV: 7685672-7685829 Caenorhabditis elegans
Exon131529   53   IV: 7686062-7686114 Caenorhabditis elegans
Exon131535   122   IV: 7686160-7686281 Caenorhabditis elegans
Exon131541   201   IV: 7686329-7686529 Caenorhabditis elegans
Exon131547   447   IV: 7686699-7687145 Caenorhabditis elegans
Exon131553   140   IV: 7687190-7687329 Caenorhabditis elegans
Exon131559   234   IV: 7687534-7687767 Caenorhabditis elegans
Exon131565   120   IV: 7687817-7687936 Caenorhabditis elegans
Exon131571   316   IV: 7687983-7688298 Caenorhabditis elegans
Exon131577   795   IV: 7688347-7689141 Caenorhabditis elegans
Exon131583   1351   IV: 7689192-7690542 Caenorhabditis elegans
Exon131589   122   IV: 7690615-7690736 Caenorhabditis elegans
Exon131597   102   IV: 7691379-7691480 Caenorhabditis elegans
Exon131603   264   IV: 7691552-7691815 Caenorhabditis elegans
Exon131609   115   IV: 7692131-7692245 Caenorhabditis elegans
Exon131614   176   IV: 7692298-7692473 Caenorhabditis elegans
Exon131619   142   IV: 7692521-7692662 Caenorhabditis elegans
Exon131625   27   IV: 7692937-7692963 Caenorhabditis elegans
Exon131629   169   IV: 7693381-7693549 Caenorhabditis elegans
Exon131634   647   IV: 7693593-7694239 Caenorhabditis elegans
Exon131639   272   IV: 7694285-7694556 Caenorhabditis elegans
Exon131644   316   IV: 7694922-7695237 Caenorhabditis elegans
Exon131649   188   IV: 7695289-7695476 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F33D4.2a.1 7675174 7696930 1

1 Sequence

Length
8906

1 Sequence Ontology Term

Identifier Name Description
transcript